Publications

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Rovibrational energy levels of the hydrogen molecule through nonadiabatic perturbation theory
(with J Komasa, M Puchalski, P Czachorowski, K Pachucki)
Phys. Rev. A 100 (3), 032519 (2019)

Specific interaction of zinc finger protein Com with RNA and the crystal structure of a self-complementary RNA duplex recognized by Com
(with M Nowacka, H Fernandes, A Kiliszek, A Bernat, JM Bujnicki)
PLOS One 14 (4), e0214481 (2019)

Isotope Effects on Nuclear Magnetic Shielding in Molecular Hydrogen
(with P Garbacz)
J. Phys. Chem. A 122 (2), 590-593 (2018)

RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme
(with Z Miao, RW Adamiak, M Antczak, RT Batey, AJ Becka, M Biesiada, et al)
RNA 23 (5), 655-672 (2017)

SimRNA: a coarse-grained method for RNA folding simulations and 3D structure prediction
(with MJ Boniecki, WK Dawson, K Tomala, P Lukasz, T Soltysinski, et al)
Nucleic acids research 44 (7), e63-e63 (2016)

Nuclear mass corrections to the Casimir-Polder interaction
(with K Pachucki)
Physical Review A 93 (3), 032518 (2016)

RNA-Puzzles Round II: assessment of RNA structure prediction programs applied to three large RNA structures
(with Z Miao, RW Adamiak, MF Blanchet, M Boniecki, JM Bujnicki, SJ Chen, et al)
RNA 21 (6), 1066-1084 (2015)

Non-contact friction for ion-surface interactions
(with UD Jentschura)
Eur. Phys. J. D 69 (4), 1-9 (2015)

One-Loop Dominance in the Imaginary Part of the Polarizability: Application to Blackbody and Noncontact van der Waals Friction
(with UD Jentschura, M De Kieviet, K Pachucki)
Phys. Rev. Lett. 114 (4), 043001 (2015)

Computational methods for prediction of RNA interactions with metal ions and small organic ligands
(with A Philips, and JM Bujnicki)
Methods in enzymology 553, 261-285 (2015)

Designability landscape reveals sequence features that define axial helix rotation in four-helical homo-oligomeric antiparallel coiled-coil structures
(with K Szczepaniak, JM Bujnicki, S Dunin-Horkawicz)
Journal of structural biology 188 (2), 123-133 (2014)

Computational modeling of RNA 3D structures, with the aid of experimental restraints
(with M Magnus, D Matelska, G Chojnowski, MJ Boniecki, E Purta, et el)
RNA Biology 11 (5), 522-536 (2014)

LigandRNA: computational predictor of RNA–ligand interactions
A Philips, K Milanowska, G Łach, JM Bujnicki
RNA 19 (12), 1605-1616 (2013)

Enhancement of blackbody friction due to the finite lifetime of atomic levels
(with M DeKieviet and UD Jentschura)
Phys. Rev. Lett. 108 (4), 043005 (2012)

MetalionRNA: computational predictor of metal-binding sites in RNA structures
(with A Philips, K Milanowska, M Boniecki, K Rother, JM Bujnicki)
Bioinformatics 28 (2), 198-205 (2012)

Einstein-Hopf drag, Doppler shift of thermal radiation and blackbody drag: Three perspectives on quantum friction
(with M DeKieviet and UD Jentschura)
Open Physics, 1-5 (2012)

NMR shielding constants in hydrogen molecule isotopomers
(with M Jaszuński and K Strasburger)
Theoretical Chemistry Accounts 129 (3), 325-330 (2012)

Quantum electrodynamics effects in rovibrational spectra of molecular hydrogen
(with J Komasa, K Piszczatowski, M Przybytek, B Jeziorski and K Pachucki)
J. Chem. Theory Comput. 7 (10), 3105–3115, (2011)

Modern experiments on atom-surface Casimir physics
(with M DeKieviet and UD Jentschura)
Casimir Physics, 393-418

Multipole effects in atom-surface interactions: A theoretical study with an application to He–α-quartz
(with M DeKieviet and UD Jentschura)
Phys. Rev. A 81 (5), 052507 (2010)

Relativistic and Quantum Electrodynamics Effects in the Helium Pair Potential
(with M Przybytek, W Cencek, J Komasa, B Jeziorski and K Szalewicz)
Phys. Rev. Lett. 104 (18), 183003 (2010)

Noble Gas, Alkali and Alkaline Atoms Interacting with a Gold Surface
(with M Dekieviet and UD Jentschura)

Theoretical determination of the dissociation energy of molecular hydrogen
(with K Piszczatowski, M Przybytek, J Komasa, K Pachucki and B Jeziorski)
J. Chem. Theory Comput. 5 (11), 3039-3048 (2009)

Direct calculation of interaction-induced molecular properties: An application to the relativistic mass-velocity and Darwin terms in the interaction energy of hydrogen atoms
(with K Piszczatowski and B Jeziorski)
Phys. Rev. A 77 (6), 062514 (2008)

Radiative Corrections to the Polarizability of Helium
(with Bogumił Jeziorski and Krzysztof Szalewicz)
Phys. Rev. Lett. 92, 233001 (2004)

Long-range relativistic interactions in the Cowan-Griffin approximation and their QED retardation: Application to helium, calcium, and cadmium dimers
(with Robert Moszyński, Michał Jaszuński and Béatrice Bussery-Honvault)
Phys. Rev. A 68, 052706 (2003)

Forbidden transitions in the helium atom
(with K. Pachucki)
Phys. Rev. A 64, 042510 (2001)


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